rs39316010 SNP Detail

Summary

• ID
  rs39316010
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122068943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTTCGT TTTGTACCTT
  CTTGAGTTTT GTTCCTTAGG CCATGCCACC TTTACCCTTG TCCCTGCCCT ATCTACACTA
  TATTGTGTTT GTTTTGGTTT TCAGAGGTCT GCTCCTCGGA GAATTGGGAC ACATCTAGAA
  AGCACAAAGG AATCGGGATC CGATGGCAGC ACAGCTGAAT CGCAGCCTGC TGAGAAACAG
  M
  ACTCACGCAG CAGCAGCAGA ACCACAGGCC CAGCGGAGAT CATTGTGCTT ATTTCTGATG
  ACGAGGCTTC TGAAACGGAG TCCCACACTT CTGGGGTTAC TTCTGTGTTA GAGGACCAAG
  AGCCCATTGT AAGAGTAACT AGGAAACGGC AGATCGTAAT TGCTTCCACC TCAAAGTCCA
  CTGTTAGGAA AAGGCAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51020938	NES13905104	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39316010					SNP	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020938	NES13905104	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122068943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			426 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			896 bp distal
Rr584274	regulatory region 584274			273 bp distal
Tssr31491	transcription start site region 31491			879 bp downstream
Tssr31492	transcription start site region 31492			259 bp upstream