rs39314176 SNP Detail

Summary

• ID
  rs39314176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116646396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTATGGGG CTATTTAAAC
  AAATGGGAAT TTCCCCAGAA AGCACATGCT GGGAGAAGGA AAAGGGGAAG CAGGGGGGAA
  TGCATCTCTC AGAGATTTCA CAACCTTACA GGGCCAAACT GAAGCCCAGA TAAGGCTGGG
  TCAAAGGAGG GCAGGGCCAC ACCTTAAGAA GGGCATAGCC CTGACCCTCT GATTTCACTG
  Y
  ACTTCAGGAC CCTGGGGTAA AATGGACTTG TGGGGTTCTC TGGCTTTTGT TGTCCCTCCT
  CCCAATGTGG TCACATTGAA TAAATCTCCT TTTTCCTGTT TTTTTTTCTC CTTTCTCTCT
  CTCTCTCTTT TTTTTAAAGA CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC TAGAACTCCC
  TCTGCAGAGC AGGCTGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859260	NES14882436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39314176					SNP	T	T	T	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859260	NES14882436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116646396 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	329 bp distal
Rr637229	regulatory region 637229	252 bp distal
Rr637230	regulatory region 637230	549 bp proximal
Rr637231	regulatory region 637231	825 bp proximal
Rr637232	regulatory region 637232	1804 bp proximal
Tssr58383	transcription start site region 58383	37 bp downstream
Tssr58384	transcription start site region 58384	within coordinates
Tssr62604	transcription start site region 62604	1044 bp upstream
Tssr62605	transcription start site region 62605	1020 bp upstream
Tssr62606	transcription start site region 62606	1972 bp downstream