rs39312950 SNP Detail

Summary

• ID
  rs39312950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101442216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAACCCTT CCTTCTTTTA AGATGCTTTG CTTTTGGGAA
  AAGGTAGGAA TGCAGGCCCT AACCTGTAAA ACAGCATTGT CCTGGAGTTA GCAAGATCCA
  R
  GAGAGTGTGG ACCTAAAGTT TGCTCTCCAG GATTTTCAAG GGTAGGGTCT GGTTTTTGTT
  TTATTAGATG TGTTTAATTA TGCATATTTG TTGTCTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51584225	NES14670153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39312950					SNP	G	G	G	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51584225	NES14670153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101442216 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Gm65570	predicted gene, 65570	within coordinates
Gm65575	predicted gene, 65575	1923 bp upstream
Rr582075	regulatory region 582075	1214 bp distal
Rr582076	regulatory region 582076	1392 bp proximal
Rr582077	regulatory region 582077	1678 bp proximal
Tssr34790	transcription start site region 34790	1535 bp downstream