rs39310659 SNP Detail

Summary

• ID
  rs39310659
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:17979196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCATCA TTTGTTTTTA
  TAGTTGTAAA GGGAATTTTC CCAAGTCCTG TGTGAGCATG CACAGATACC TGAGTGGGAA
  GCTGGAATCT TGATGTGGGG AGCAGGTAAT AAAACCCCGG TTGAGATACC TGCCTGTCCT
  GCCTGTCCTT GTTGATGAGA GGTTCACATG CATTCCAGAC TCCTATCCAA AACATTAAGA
  M
  AAAAACCTTC CTGCTTATTG TAGAGAATGC AGTAGGGATA GCTGTAAAGG AGGGCTTTGA
  TGATTTCAGG GAGGAGCATT TGAATCAGGG CTGCCTGAGC CCAAAGCATC CTGAGCACCT
  CTGTGTTTCT CAGCTTCTCT GTACAGGGAC CAGCAGCCCT CCAGCCAGCC CAGACACTTT
  CAGGATCCCC TTTCAGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51883293	NES14902302	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs39310659					SNP	A	C	C	C	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883293	NES14902302	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17979196 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	mRNA-UTR
Rr642879	regulatory region 642879	1103 bp distal
Tssr64734	transcription start site region 64734	55 bp downstream
Tssr64735	transcription start site region 64735	35 bp downstream
Tssr64736	transcription start site region 64736	114 bp upstream