rs39307933 SNP Detail

Summary

• ID
  rs39307933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152022384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGGAAA GGGAAAGGGA
  AAGAAAACGG GGAGGGCCTC AGGAGTCCAG TGCTTGTTGT ACAGGCTTGG GTTTGGATCC
  CAGCCCCCAC ATAAAAGCCA GGTGTGGTGA CGTGTGCGTA TAACCCTTGC ACGAGGGGAA
  AGGAGACAGG TAGATCTCGA GAGCTCACTG GCTAAGCAGC ATGTACAAGC CCCATTAGAT
  Y
  CCAGCTTTGA AACAGAAAAA AACAAAACAA CAAAACAACA ACAAATCCAG AAAGGAAGAT
  CCTCACAAGG AATTATCACA CCCAGAATTA ATTCTTATTT TTATAGTATG TGGCTTCCAG
  GCTTCCTTAC ACTGCTGCAG TGATGATTTC CTGCAGACAC ACTGCCCACA AAGAGTTCAT
  CGTTAACCTT TCTATTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51059798	NES13424244	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	C	C	C		T	C	C		T
ss321028631	CHEV_3_151979711	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39307933					SNP	T	T	C	T	T	T	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059798	NES13424244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152022384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			1479 bp distal
Rr587524	regulatory region 587524			519 bp distal
Rr587525	regulatory region 587525			915 bp distal
Rr587526	regulatory region 587526			871 bp distal
Rr587527	regulatory region 587527			452 bp distal
Rr587528	regulatory region 587528			within coordinates