rs39285231 SNP Detail

Summary

• ID
  rs39285231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66441841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCATC AATAAGACAA
  AAAGACCACC AACAGATTGG GAAAGGATCT TTACCTATCT TAAATCAGGT AGGGGACTAA
  TATTCAATAT ATATATATAA AGAACTCAAG AGGGTGGACT CCAGAAAATC AAATAGCCCC
  CTTAAAAGAT GGGGCTCAGA GCTGAACAAA GAATTCTCAT CCTTCCTAGT TCTTCACAGT
  R
  TCTCCTGCCT TTATTCTCAT GTGTTTCATT TAATACTGCT CCATCAGCAA CTCACTGGCA
  TAAACATCTC CATTCCATAT ACCTGTGGTC CCGTTCGAAT CCAAGCACAG AAAAACAAAC
  CATTGTATGT TTTATCTCAA GGAAACCTGT ACCCCAGCAG TGCACATGTA CATCATGTGA
  GATGTGTGTT ATTCTGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968818	NES13934379	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39285231					SNP	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968818	NES13934379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66441841 () rs orientation: forward

Symbol	Name	Function Class
Rr807	regulatory region 807	1051 bp proximal
Rr577841	regulatory region 577841	1449 bp proximal