rs39279345 SNP Detail

Summary

• ID
  rs39279345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCACG TGGTCCGCTA
  AATGGGCGGG GCCACGTGGC TGGTCGTTTT TTTTTTTTTT TTTTTTTTTT TACTTCTAAG
  AGCTCTCTGA AGCTCCACAG CAGGTTGGCC TGGGATTGGG ACCGTTGGCA CGACAGATGC
  TGTAGGTGGT AGTCACTCGG CTCCTCTGAC CCTAAACCAC ACAGGTAGGA AGAGGCTGCT
  W
  TACCCTAAGA ACAAAGCAGT TGGCAGGTTT GTTGTAGAAA AAAGGGGGGA TGTCGGGGAA
  GCTTGAGTAG CGACAAGAAG TGAGATCTGC CCCCTACCAT CTCACGCAGG AACGGGGGAA
  TGAAGAAATA TCGCTTGTGA ACAATCCTTC CTTCTGTAAG CAGTTAGAAG ATAGGTTCAA
  AACTGATGTC GCCTTTAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442548	NES14434474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39279345					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442548	NES14434474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691903 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	200 bp upstream
Gm65438	predicted gene, 65438	1054 bp downstream
Rr574324	regulatory region 574324	1459 bp proximal
Rr574325	regulatory region 574325	1693 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	117 bp downstream
Tssr28598	transcription start site region 28598	94 bp downstream