rs39259725 SNP Detail

Summary

• ID
  rs39259725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17027140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCAGAA CTGCCCCTGT
  ATTGCAGACC TGCGCCTACA CCCCCTTCCT CTACCTTCAA AGAGTGTATG AGGTAACAAA
  TTCCTTTTAT CCAAAAGTAT TGATTAATCT GACAACCTGT CAAGCATTCT TCACCCGAGA
  GAAAAAAATG GCAGTGAGAA ATCAATGCTG CCAGTGCTTT AAATAATTAT AATTTTAAAA
  Y
  AGAAAAAATC TTGAGTAACT TATTATCTTT GAGGCAAACA CACCTCCACA CATACATGAA
  CAAGCACACC CAGACATTCT CTGTCACAGT TTGTTATAAT TGTCCAACTG TTTTCTCCCT
  TCTTTCACGC ATAGGTTTAT TAGGATTCCC AAAAGTGCTT TAAACAAAAT AAATCAATAT
  CTTTGATTCA TCTACCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51242745	NES13804957	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T		C	T	C		C
ss321753296	CHEV_6_16977141	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39259725					SNP	T	T	T	C	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242745	NES13804957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17027140 () rs orientation: forward

Symbol	Name	Function Class
Rr626745	regulatory region 626745	484 bp proximal
Rr626746	regulatory region 626746	599 bp proximal