rs39259049 SNP Detail

Summary

• ID
  rs39259049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69808469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGACTC AGTGGTTAAG
  ATGCTGCAAA GTCATGACAC TGGAATTTAG ACCCCAGCCA TCCATTCACA AGGATTAAGT
  GGGACTTTTC TCTCAAGTTA GAGTCTGAGT GCCCTGTGTG TTACTAGTTG TGTCAGCTGT
  CTTATTTTAA CCAAATAGCT TCTATGAGAT GAGACACATG CTGGCTTGTC TTCTACACAG
  Y
  AGGTAACATG GCAGAGTCCA GGAACTACTC AAATATAATT GAACAGCACA ATAAATAAGA
  TAAAGGGAAA TAGTTTGAAA CAGTCACGTG GAGACCAGAA AGAAAGGAAG AAAGAAAGGA
  AGAAAGAAAG AGAGGAAGGA AGAAAGAAAG ACAGGAAGGA AGGAAGGAAG GAAGGAAGGA
  AGGAAGAGAA AATGAAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50977472	NES13926367	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39259049					SNP	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977472	NES13926367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69808469 () rs orientation: forward

Symbol	Name	Function Class
Rr578240	regulatory region 578240	821 bp proximal
Rr578241	regulatory region 578241	1761 bp proximal