rs39245532 SNP Detail

Summary

• ID
  rs39245532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86846481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCCCGG CAGGAATTTT
  TTCAATTTTA TTATTTATTT ATTGTTTGTT TGTGCATGTG TGCTTGTGTT TACATACTAC
  AGTATATGTG GAATTCAAAA GTCAACTTAA GAGACTGGAT TCTCTGCTGC CTTTCTGTAG
  GTCGTTGGGC TTGAACTCTG GTCTTGGAAG CAAGATGCTT GGCAAGGAGT GTCTTAATGA
  Y
  TGGGCCAGGA AATTTGTTTG TTTGTTTGTT TAAAGGCTTT GGGCATTTGT TTTCTTACTT
  CCTTACACTA ACTTTCTGAA TGTTAAATTC CTGGCTCCAA AGATGGGCAC GTTTTAGTTT
  TCAATTCAAG CTACAAGCCT TTCTCCAGGA AGGTTGGTCT GTAAGGACGT CTGTCTTGTC
  TGCCATGGTT AGAAGATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51748777	NES14798585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39245532					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748777	NES14798585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86846481 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			812 bp proximal
Tssr57515	transcription start site region 57515			1311 bp upstream