rs39244296 SNP Detail

Summary

• ID
  rs39244296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65176144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGAGTC CAAGCATGGG
  GAAGAGCTGG GAATGTTCCT GGTCTGAGCC GGGGTGTGGA GCAGAGGCTG ATGCACATGG
  CAAGGGACAG GACAGCAGGA TTGCCAAACC TCTCCTCCCT GCCAGACTAA CAGCTGAGCT
  GCTGCTACCG GGCTGGCTTG CCTGTCAACC GCATCCACGG CTTCCCTGCG GAGGAAGCTG
  Y
  AGAGGCCTGC GGTTTGAGGT TAGAAATCCT GGCTCCTTTC TCTTAGACCG TGGGTTCTTT
  TTTTCTTATT CCAGCATGCT CTTGAGTTGA TCTCCTGATA TCCCCCCTGG ATTTTCTGAG
  CATCTTAATT AAATGTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CCCTGTCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50435850	NES13449474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	T		T
ss325655610	CHEV_18_65202727	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39244296					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50435850	NES13449474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65176144 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539433	regulatory region 539433			within coordinates
Rr539434	regulatory region 539434			430 bp proximal