rs39231853 SNP Detail

Summary

• ID
  rs39231853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120896179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATAGCAG TAAACCCTTT
  TAACTGTCTG ATGTAGAACA TGTTCCCACC AAACCACCAC ATATTATGGT AATTGGCTCC
  AATTTCTGAA TCTTACATTG TAAAGTTACA AAGACTTGGG TAGAACCGAA AAACAAATGT
  ACAATATTCA TCTTGTTACC CATCTCATTA TGAGATGTGT TTGCTCTCTA CCTCTAGCGA
  R
  GACAGGTCTG ATCTGCTGAA CTGTTTGTTC CTGCGAACAA TATTTTCATA TCCTGCTTCC
  TTTTTAAAAA AAAAAATCTA GTGATATAAA TACATTTTTC CCAAATAACC CTTCTCTAAC
  TCCAAAACAT CACAGAGCGT ACTCCTTCAG CCTCTGTAAC ACGTGCGTTA TCTGTGCATG
  CCTGAGCCAC ACGGTAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51606479	NES14664191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39231853					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51606479	NES14664191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120896179 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr584003	regulatory region 584003	58 bp distal
Rr584004	regulatory region 584004	1986 bp proximal