rs39226876 SNP Detail

Summary

• ID
  rs39226876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108043080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACAGAAG GTGTTTTGAT GATATGCACC ACCACCCTCT
  CTGGTCCCTC ACCCTCTCCC AGTAATCCTT CACCTTCCTG GCTAGTGCCC CTTTTATCTT
  Y
  CATCTCGCTG TGGTGAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTAGGAGACA
  GAGAGCCAAT GAGTTTCATC AAGGTTGTTT ACTGGAACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51821978	NES14764689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	T
ss133494238	ENSMUSSNP5397676	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39226876					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821978	NES14764689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108043080 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	1137 bp upstream
Rr399804	regulatory region 399804	926 bp downstream
Rr399805	regulatory region 399805	619 bp downstream
Rr399806	regulatory region 399806	99 bp downstream
Rr636028	regulatory region 636028	1148 bp distal
Rr636029	regulatory region 636029	1064 bp distal
Rr636030	regulatory region 636030	800 bp distal
Rr636031	regulatory region 636031	295 bp distal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	1066 bp downstream