rs39223470 SNP Detail

Summary

• ID
  rs39223470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143654155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAACCCA CTGCAGCAGG
  GTTTTAGCAA GTGCTCGAGC AAGGGATTTG TCCCTTGCTC CTTGAAGGGG GATCATCATC
  TTTAAAGGCA GCCCAGGAAA GGTTCCAGAC TTTTCATCAG AGAAGGAAAT GGCATCTTAT
  AGACTATCTG TTTGCAGATA TGCCTGTTTC CTAATTACTG ACCATTAAAT CACTAAAAGA
  Y
  GGTCTGTGGT GCTTGTATGT TAGAAGCAAA TAAATATTAA TAATAGGATG GTAACTCTAG
  AGAGGATTAT AGAGCATTTG TCTTTAATGA TGCAGGGAAC TGGGAATGTG GCTGAAGGGA
  GGCACCCAGA CAAGGTCTGC TTTCCTTTGG AGGGCTGTAC ATAGATAAGG CAAAGAGAAT
  CTCTGGATAT CTCAAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss51658682	NES14642468	PERLEGEN	MM_PANEL2	f	SNP		C	C		T	T
ss136027348	ENSMUSSNP2662853	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs39223470					SNP	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658682	NES14642468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143654155 () rs orientation: forward

Symbol	Name	Function Class
Rr375845	regulatory region 375845	1534 bp downstream
Rr406686	regulatory region 406686	within coordinates
Rr586568	regulatory region 586568	243 bp distal
Rr586569	regulatory region 586569	768 bp proximal