rs39207199 SNP Detail

Summary

• ID
  rs39207199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102241422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTATGACT TGCCCCACGG
  AGGGCTTTGC CCAGCATTCC TCAGTGCTAC CAAGAGGAGT GATTAGCCCC TCGCCACCAC
  TCTCCCCACC TCATCTCACC TCACCTAAAA TATACACTAC ACACTGATGA ACATATAGGT
  TCTGCCTCCC ACATATGAGC TGATGCAGGA GAGTGAGCAT GCTCAGTTCA TATTTTGGGG
  Y
  GACCGTGACG AGAGAGCTCT GTCAAGTGTG AAAGGCATCT CGCTCCACAG GTCCCAGCAT
  TGTATGCAGT GCTGGTAAAG GATAAGGGGA AATCCAGAAA TGCCTTTGCT TGTGACCTAA
  TATTTCTGGG GTAGTTTGAG GCTGGGACCC GACAGTGTTA CCTGCTTCCA ATGTTCTGCA
  GTTCAGCTTC TTCACGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51585443	NES14664846	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39207199					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51585443	NES14664846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102241422 () rs orientation: forward

Symbol	Name	Function Class
Rr582225	regulatory region 582225	1156 bp proximal
Rr582226	regulatory region 582226	1256 bp proximal
Rr582227	regulatory region 582227	1303 bp proximal
Tssr30927	transcription start site region 30927	1878 bp downstream