rs39205849 SNP Detail

Summary

• ID
  rs39205849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84389429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTAAAT CTTCAATCTT
  AGGTTACCCT AAGTATACTG ATCCCCCAGT CCAATTCTGA CCATTCCCAG ATGTGCATTG
  ATCCAAGACA TAGTCCCTTG GGAGTATTTA GCAGGCCACA TGTTTAGCTC TGACTCAGTG
  ACACGACACA TAGAGATGTG CCAATTCCTA ATGCACACTG GCTCCTCAGT TGCAAACAAC
  R
  CACAGGCTAA TCCTAGACTC CACAAGACAC TGATCCCTAA ACCCCAGAAG GTGGTCATCG
  CCAGCTTTCC AACCACACGT TGACCCCAAT CCCAATGGCT GTCTGTCACG CGCAGCTGAA
  GCCTTACGTA GACTCTTACC ATCCAGTCTA AACCACCGGC ATGGATGCCG CAGGCTAAAC
  ACTCACCCCA TGAACCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51733528	NES14803108	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A		A	A	A	A		A
ss321844890	CHEV_6_84362441	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39205849					SNP	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51733528	NES14803108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84389429 () rs orientation: forward

Symbol	Name	Function Class
Gm10445	predicted gene 10445	495 bp downstream
Rr633048	regulatory region 633048	1795 bp distal
Rr633049	regulatory region 633049	1936 bp proximal