rs39202961 SNP Detail

Summary

• ID
  rs39202961
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:106898350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG AGATTCTTTC TGAAACAGGA
  V
  CACAAGAGGG AGAAGATATT GTCTT                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss51401927	NES13706952	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	A	A		A
ss133479571	ENSMUSSNP4413432	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321887639	CHEV_6_106871383	CHEVERUD	SCREENING_POP	f	SNP											G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs39202961					SNP	A	A	A	A	A	A	A	C	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51401927	NES13706952	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:106898350 () rs orientation: forward

Symbol	Name	Function Class
Rr635980	regulatory region 635980	200 bp distal