rs39193924 SNP Detail

Summary

• ID
  rs39193924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98082261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTTCA CATTTTATAA
  TTATATGACT AGATTTTAAG ATCTCAGAAG GTCATAGAAC TTCCCATACT TGTTTGGGCT
  CTAGTTCCAA GAGCCAAGCA AATATTTTTG TGGCTTCTGA CAGATAGTTG TGCGATTTAA
  ACATTAATTG AACATTTGGA GCAAAGAAAA GCACTGTACT AAGACACTGG TCCATCGAAG
  Y
  TGATCAGAAA TAAAATAGCC TGTATTTGAA TGTAGCTAAT ATGCTCTCTT AAAATGATAA
  TTTATATCTG AAGGCAGTTG TTGTCAGCTT TAAGAACCTG CAGTTCACCA TCTGGCCAGA
  AGATGGCACA GTGTTCAAGC AATCGCTTCT CAAAGTGAAA CCCAGTGGGG AAAAAGGAAT
  GAAATTGCAC TCGGACCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380875	NES13737576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39193924					SNP	C	C	C	C	C	C	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380875	NES13737576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98082261 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	1836 bp downstream
Rr635261	regulatory region 635261	655 bp distal
Rr635262	regulatory region 635262	within coordinates
Rr635263	regulatory region 635263	112 bp proximal
Rr635264	regulatory region 635264	1960 bp proximal