rs39186866 SNP Detail

Summary

• ID
  rs39186866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143912999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTCTGCTTC CCCTCTGAGA TTTCGGGCCT GCACAAGATC
  TTCATGGCTA CTGTTGTATT AAAATACATC ATATGGGAAG ATTTCCATAC CTGTACAAGC
  Y
  CCTTATTGTA CATAAAAAAA AAAGGTCTTT ATTTTCTTTT CCTTTAAAAT GATTTAAAAA
  AAAACAAAAA CAAAAACCAG CACACATATC ATACAGAATC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51655514	NES14643415	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss136029277	ENSMUSSNP3529924	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39186866					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655514	NES14643415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143912999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	1278 bp distal
Rr398096	regulatory region 398096	1458 bp downstream
Rr586602	regulatory region 586602	1528 bp distal
Rr586603	regulatory region 586603	226 bp proximal
Tssr35972	transcription start site region 35972	1708 bp upstream
Tssr35973	transcription start site region 35973	1253 bp upstream