rs39186484 SNP Detail

Summary

• ID
  rs39186484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66309884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTAGTGG GTAGATGCTG
  ATGCAGAGCC CTTCTCTGGG GAGTGTCCCC CTATCTGCAA AGGGTTAGGA TTTCCATTTC
  TGGATCTCTG CTGCATCTCA GAGAGGGGAA GGGGGGAGGG CATTGATCTC ACCTCCAAAA
  TGCATTTGAC TGAGTTATGT TCCTGGGGAG AAGAAAGTTA ATTCTTCATA GGATTCTTTC
  Y
  CCCAGTGAAA GGACACACTA AGACTGCCCA TATCTGCTCA GGTCTGAGGC TACTCAAGTC
  ACAGGAACTT TGACCATCCA GCCAGTCTGA TGGCAGGGCC CTGATGCCAT CTGGTGCCTT
  GTTTCCGTGG TTTGGATATA CTGGATGAAG GGAGAGAATG GATAACCTAC AGGAAGTCTG
  ATGAACAGGA CAGGCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50970324	NES13937290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39186484					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970324	NES13937290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66309884 () rs orientation: forward

Symbol	Name	Function Class
Gm35236	predicted gene, 35236	within coordinates
Rr2055	regulatory region 2055	within coordinates
Rr577827	regulatory region 577827	1264 bp distal
Rr577828	regulatory region 577828	806 bp distal
Tssr29427	transcription start site region 29427	1302 bp downstream