rs39176314 SNP Detail

Summary

• ID
  rs39176314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:79995660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTTTAA AAGCATAGTG
  TGCTCTCTCT CGAATGGGAT GGCATCCTTA CGTGGTTGTT TTTTGAAAAC GAAAATATAG
  ACAAACCAAA AACAATCATA AATACAATAA AAAAATTATT CCTGCCATTA AAAATGAGGA
  CATATCACTC GTGGCACCCT GAAAAGCATT TTAAACCAAA AACCAACTTT CCAAACCTAC
  R
  GATCACAGAC ATTTGGAGGG AGAGAGACCT AGGAAGTTGC TAACAGCTGC TGCAGCTGTG
  AAGCATAAAC CCCACCATAA ACCTTTTATA ATTTATACTA CTGGAGCGGC GGGGGGTTGG
  GGGGGGGGTG ATCCTGTGCC TTTAATTTCC CTTTCTGAGC AGGGAAGGCT GCACAGCCCT
  GACAAGCTCA CTTGTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51705501	NES14809925	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39176314					SNP	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705501	NES14809925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79995660 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	200 bp upstream
Rr632526	regulatory region 632526	10 bp proximal
Rr632527	regulatory region 632527	221 bp proximal
Rr632528	regulatory region 632528	476 bp proximal
Rr632529	regulatory region 632529	977 bp proximal
Tssr57230	transcription start site region 57230	228 bp upstream
Tssr57231	transcription start site region 57231	280 bp upstream
Tssr57232	transcription start site region 57232	331 bp upstream
Tssr57233	transcription start site region 57233	391 bp upstream