rs39174584 SNP Detail

Summary

• ID
  rs39174584
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68190410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAATTTG CAGTATACTT
  TACTGCATAG AAGACCTTTA TATCAAGGGG ATAAAGATTT TTCTTAACCA CCTAGTTAAT
  TTCCAGAGAG CACAGACAGC ACTTAAATAA TTTAGCAAGA CCACCATGGC ACCACTGGAC
  CTCAGCTGTA GCTCCTATCT AGAAGAGAAA CTAGGCACTC AGCTCCTTAC AATGTGGCTC
  M
  TGGAAGCTAG GAAAGTTTTG CAATAGCCCT TTCTTTTCCT TATACAGAAA GTACAAGTAC
  AGATGACTGA ATGAAAAGAA AGGAAATATA GTTTGTGTAA ACATTTACAT TTAATTTTGT
  CTTAATTTCT TGAGGCCCAT TATGTGTGTA TCAAGGCGCG TAACAGCTTT AAGTTAACAA
  TACAACAATG CATCATTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50976066	NES13930595	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39174584					SNP	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976066	NES13930595	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68190410 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	99 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	812 bp downstream