rs39161686 SNP Detail

Summary

• ID
  rs39161686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68192249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATCATG CCACCCACAG
  GTCAATTCAG CATGAGGCAT GGCAGGATGC TTAATGATAA GTTACATACG CTCTCAAAGG
  ATTTCCTAAA CCTGCCATTC GCTAGCTTTG TCATTGAGCT ATGATTCCTG TAATTGAGAG
  AATAGAATTC TACCTCCCAG TGAGTGATAT GTTGGATCTT TCAGTACTGA GATAAAAATA
  R
  AGAAATTATC ATACATGGTG CAGATTGTAA AGTATACTTT GTTTCTGCAA CAAAATTAAT
  AAAATCAACT GACCCTAGAG GTATTTTCTA AATTCTGTTA GTAGGAATAT ATTAGGAGGG
  TAATTTTTCT GAGTATAGGA AACTAGATAG CAAAAGAATG GTTTTAAATA AAATAAGTTT
  AGATATGTGT GTGTGCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50976020	NES13930618	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39161686					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976020	NES13930618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68192249 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	912 bp distal
Schip1	schwannomin interacting protein 1	Intron