rs39158345 SNP Detail

Summary

• ID
  rs39158345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118224919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGGGGA AGTACAGAGG
  AACACTGCCA TAGTGGCAGT GGCCTTGAGA GATCAAAAGG TGCTGAAAGC ACCCCTTGCC
  CGAAAAACAC ACCTTCAGTT ATTAGGGCGC GAGGGAATTG TAGATTCTAA TAAACATGGC
  TTGCAGGAGT CGACGAACAA AGGTACTTAA TGCGGACCTA AGCCTCCGCT GCTATTGCTC
  Y
  GATAGCGGTA CCTAAATATT CGAGAGGAAA GTGTAAGTTG ATCAACAAAC GCCCTGGTAG
  TATTGGGCTT TTTCCCTTTT CCGTTTTTTT GTGTGGAGGG TGGAGGGGGG TGGGGAGAGT
  GGATGGGTGG GGGAAATCCG ACAGCTTAAG GAGGTTTGAA TTGAATATGC ACCCAGCGGC
  AGTGGTCTCG TAGGAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	PWD/PhJ
ss51605939	NES14668369	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	PWD/PhJ
rs39158345					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51605939	NES14668369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118224919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13749	CpG island 13749	670 bp distal
Gm26871	predicted gene, 26871	within coordinates
Rr375642	regulatory region 375642	1775 bp upstream
Rr583893	regulatory region 583893	858 bp distal
Rr583894	regulatory region 583894	877 bp distal
Rr583895	regulatory region 583895	within coordinates
Rr583896	regulatory region 583896	210 bp proximal
Rr583897	regulatory region 583897	1584 bp proximal
Tssr31405	transcription start site region 31405	1196 bp downstream
Tssr31406	transcription start site region 31406	902 bp downstream
Tssr31407	transcription start site region 31407	793 bp downstream
Tssr31408	transcription start site region 31408	149 bp upstream
Tssr31409	transcription start site region 31409	223 bp upstream
Tssr31410	transcription start site region 31410	256 bp upstream