rs39157676 SNP Detail

Summary

• ID
  rs39157676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:70346177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTTATA CTCAGATGAT
  ACAAGGGTAT GTTTGGGTAA GACAACAAGA ATGAGCTTGT TTATATATAA GTACAAGTAA
  ATGATGTTTT GCAGAGAAAA TTATTAATGA TTTATAATAG CCGTACAAAA TATTACTTGT
  AGACATTTAT ATGGAATGAA TAATAGATGT TTGGCTTAAT TATTTTAAAT GAAAGGTACA
  Y
  TTGCTTATAA AGATAACTTA ATGGAATTAT AGTTTATGCT AGGTTATTAT GATAGTTTTA
  CTTAGATTAG CATAAATCAA TGGGGGAAAC ACTGCAATTT TTTAAACCAA ACTATCAATT
  AGGACTTTGA AAATTATATT GATTATTGCA CTTTTAGATA CTACAAATGA ATAAGATAGA
  AATGTTCTAA ATTATAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50980664	NES13927784	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39157676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50980664	NES13927784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:70346177 () rs orientation: forward

Symbol	Name	Function Class
Rr578269	regulatory region 578269	1885 bp distal