rs39157106 SNP Detail

Summary

• ID
  rs39157106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101468891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGAAAGA TACAGAAGAG AAGAGAAGGT TGCTGTCGGT
  CACAGGGAGT AAGCAGGGAG GCCGAGTGGG AGCCTGGTTC GATCTGGACA GTGGGTTCCC
  R
  ACAGCGGTGC TCCTCTGTAA ATGGTGTAGT TTCTTCTTTC AGTAAAATGC TTTCGGAGTC
  TTCATTTCCA GGGTCTCTAA TCAAACTTCT GGGGAACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51583991	NES14669486	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A	A		A	A		G
ss135548567	ENSMUSSNP6566785	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320852556	CHEV_3_101365498	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39157106					SNP	A	A	G	G	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51583991	NES14669486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101468891 () rs orientation: forward

Symbol	Name	Function Class
Rr582081	regulatory region 582081	within coordinates
Rr582082	regulatory region 582082	1008 bp proximal