rs39153806 SNP Detail

Summary

• ID
  rs39153806
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86770467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC AGAGCCCGCG GCGGAGGTCC
  V
  GACCACTGCC CTAAGCCCCT TACCT                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51749434	NES14799912	PERLEGEN	MM_PANEL2	f	SNP			G	G	G		G	G	G		A
ss133359405	ENSMUSSNP519024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321847289	CHEV_6_86743479	CHEVERUD	SCREENING_POP	f	SNP						G				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39153806					SNP	C	C	G	G	G	G	G	G	G	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749434	NES14799912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86770467 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	within coordinates
Rr633515	regulatory region 633515	within coordinates
Rr633516	regulatory region 633516	89 bp proximal
Rr633517	regulatory region 633517	1481 bp proximal
Tssr61864	transcription start site region 61864	37 bp downstream
Tssr61865	transcription start site region 61865	105 bp downstream