rs39151028 SNP Detail

Summary

• ID
  rs39151028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31090450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATATGG GTGTGTGTAG
  GGAGATGGGA GTTGGATCTG GACAGAGTAC AGTGTAAGTA TGATCAAAAC ATACATGCCT
  GCATGAAAGT CTCAAAGAAT TAACAAATTA TTTTTTAAAA GTAAGCATAA AATAGAAACC
  TAGATTATTT CCTTCACACA CACACAAAAA AAAAAAAAAA CAGAAAAAAA TGTAATCTTT
  R
  TAATGTAACT GGTAACAAAT TTCATCTGGG TAACTTGTTT CTTTTTAATT CAGAAAGAAG
  AAAAACATAC ATATAAATAT GACGTTTGTT TGGAAAATTA CTTCATCCAT GTACTGCCCA
  GCTCATAAAA ACAAGCCTCC GTTCCAGCCA AAGGGGGACA CTCTGACCTT GTTTACTGCA
  GTGTTTTGAA ACCGCGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260165	NES13793979	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39151028					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260165	NES13793979	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31090450 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	220 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	476 bp distal
Rr627886	regulatory region 627886	343 bp distal
Rr627887	regulatory region 627887	61 bp proximal
Rr627888	regulatory region 627888	231 bp proximal
Rr627889	regulatory region 627889	873 bp proximal
Tssr55448	transcription start site region 55448	255 bp upstream
Tssr60154	transcription start site region 60154	33 bp upstream
Tssr60155	transcription start site region 60155	1287 bp downstream
Tssr60156	transcription start site region 60156	1501 bp downstream
Tssr60157	transcription start site region 60157	1572 bp downstream