rs39138632 SNP Detail

Summary

• ID
  rs39138632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142094355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTAAA GGACTTCTTA
  AATTTCTACT TGTCTGTATA TCTGTATCTC TCTCTCTCTC TCTCTCTCTC TCTCCCTCTC
  TTTGTGTGTT TGTGTATGTT TGGGTGTGTG TGTGTGTGTG TATGTGTGTG TGTGTGTGTG
  TGTGTGTGCA CACAGGGGAC ATCTTGCCCT GTTACTACTC AAAAACATGG CCAGTCTCAC
  Y
  TTCATACACA GGCTGAAATC CACCATAGAA GACCCAAGGT TTAAATGGAT ATAGCCTAGA
  ATAAGAGGTC TCTATATGTG GTGCCAAATG CTATACATTC ATTCTCTGTG TGTGCATTTG
  TGTGCACCTA TGTGTGGAGG TAAGCTATAT GTCAAATGTC ATCCCTGGGA CTGTGTCCAC
  CTTGTCTCTT TAGCCTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51529089	NES14869793	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39138632					SNP	C	T	T	T	C	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529089	NES14869793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142094355 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	831 bp upstream
Sdk1	sidekick cell adhesion molecule 1	Intron