rs39129950 SNP Detail

Summary

• ID
  rs39129950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATGTCA AAGGGGCTGC
  CACTCACAGG CTGCATTAGA AGATTGTGTG CCTGGGGAAA CAAAAGACAC GCTGCCAAAG
  GATGTGCACG AGGAAAAGGC GCGGGAACCG GACAGATGCG CTGCGCTATA GGCTTTAAAT
  CAACAACTTT ATATAATGAG TTCTACATGG ACTCCCCAAC TCAGCTACCT GACTCGGGCA
  R
  CAGGCATCCA AGTGAATGTA TGCCCTACAC AAGTGGTGCT TGCTCTGAGT ACCTAACTAC
  TTCCAACACT CTGTGGACAT AAAAATTCTG TAAATTGAGA TTTAAAAAAA ACCCACTCAG
  GACACATATC TGAAATGACA CCATCTTCCT ATATTTCTTT TAAAAATTTT TTTTAAACGT
  GTTATGTGCC TGCATGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259935	NES13793804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39129950					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259935	NES13793804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104716 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	1033 bp downstream
Rr627895	regulatory region 627895	1981 bp distal
Rr627896	regulatory region 627896	1289 bp distal
Rr627897	regulatory region 627897	770 bp distal
Rr627898	regulatory region 627898	1199 bp distal
Rr627899	regulatory region 627899	1280 bp proximal
Tssr55453	transcription start site region 55453	1039 bp downstream
Tssr60158	transcription start site region 60158	1440 bp upstream
Tssr60159	transcription start site region 60159	1278 bp upstream
Tssr60160	transcription start site region 60160	1244 bp upstream
Tssr60161	transcription start site region 60161	1220 bp upstream
Tssr60162	transcription start site region 60162	1051 bp upstream