rs39128885 SNP Detail

Summary

• ID
  rs39128885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100684773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTAAAT AAAAAGGGAG
  CAGGAGGGGG CAGATTCCCC CACCGACTCC TTTATTGCTT TTCAAATTCT GCCTGGGTGA
  AATTTTTGTG GTTGAGAAGG AATTTCATGT AGGGAGGAAG AGAAAGCCTC GTGACTTAAT
  CTTTTTACGT GGCCAGAATC CAGAGGAGAT GAGGGGCTGC CTGATCTCAT TTCTCTTGCA
  Y
  GATGAAGGTC AGGTTTGTGG CCGTAGTTGG CAGAAAGCTT GAGGGTGGAT GGGACCCAGC
  CGGCCACCTG CTGACCACAC AGAGCCTAGG CTGGCCTCCT GAGGGCCCTG CTCTAAGAGA
  ACCAAGATCT GCCACGTCAG TGTGGAGAAC GAAGCCTTCT TCCACATCTT GTTTTCATTT
  TCAGCAAATT TTCCATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794131	NES14788295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39128885					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794131	NES14788295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100684773 () rs orientation: forward

Symbol	Name	Function Class
Gxylt2	glucoside xylosyltransferase 2	Intron
Rr635698	regulatory region 635698	within coordinates
Rr635699	regulatory region 635699	1615 bp proximal