rs39127811 SNP Detail

Summary

• ID
  rs39127811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18819690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCTTCC TGGAGGAATT
  TCTGAAATTG GCTTTTAACT GTGGCCTCTA TTCACATCAC AGCCCTGCCA CCTAGTGGCC
  AATTACCCAG ATTTAACTAC AATACCTCGG ATGAAAGGTG CGAATACTGA CTTGTTTATC
  AAAGAACTGA AGTGTAAAAG TATATTCAGC TTCATTAGGT AAGGAGATTC TAAGCCATAC
  R
  TAGAAAACAT TTTACAACAA TGAGAATGTT CAAACTTTTA ATGTTTCGCT AAGCTGATTG
  AAATGAATGC CTATAGATAA GACGTTCGTC ATTCCAATGT GTTCTCAGTA TGTGACATAT
  GCATCTTTAT TCCAAGCAGT GTCTTTGCTC ATTAAGATCA AGCATTGTTG CTTTTCCCTC
  ATCTTCAATA AAGTCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51245879	NES13801906	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	A	G		G
ss321759395	CHEV_6_18769691	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39127811					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245879	NES13801906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18819690 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	11 bp distal
Rr626952	regulatory region 626952	118 bp distal