rs39122165 SNP Detail

Summary

• ID
  rs39122165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85820084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCACAGG GCAAATCCCA
  GTGGGCTGTT TCTGTTTCTC TCCTGAGTGG AGCAACTCCT TGATGAATGT GGTTACCAAA
  GAAGTACAGG GATCACCCTG AATGGCTGAT AGAGCAGGGA CTGTACTGCA GATCCTGGGA
  AGAGAGCACT AATGGGGCAT GCCAGTCTGC CACTGCGGGA TAAGACTTTG GTGGAAGTGA
  Y
  TGTAAAGGGC CGTCATGGTT GTGGTGGTGT TAGATGCACG GTTCACTGAG TAGATGAGTC
  TGTGTTTACC AGAGACTTAT TTTGTCAGGG CCCTCTGGTC TGCTGTGGGC TTCAATGGCT
  TTACTCAGCC TCGTGGTAGG GCGTAATTCT CGGATAACAG AAGAGGTGCT GGTGAATCGC
  AACGACCTGA ACTGATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51759196	NES14803657	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39122165					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51759196	NES14803657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85820084 () rs orientation: forward

Symbol	Name	Function Class
Gm68507	predicted gene, 68507	within coordinates
Ptges3-ps	prostaglandin E synthase 3, pseudogene	878 bp upstream
Rr633275	regulatory region 633275	679 bp proximal