rs39118869 SNP Detail

Summary

• ID
  rs39118869
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8417923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAAAAAT ATGGCAATTC
  TCAGTACATA TTCAAAATAA TAAGTTTTCA AAATGATGGA AACGGTGACA GCATCGGGCT
  CCAGAATAGT GGGAACAGCA GAGCATGTTA GCTTTGTCCT GGGATAACAG GCATGGTGTG
  GACGGAGTAC AACATATAGC TCAGGGTTCT GAGAGGCATT TACTTTACCT ACCTTAAGAA
  K
  TGCAGATGTT CATCCTATCA GCATACAGAC AAAAAGAACA AAAGTCATTA CTGTTCGTTG
  TGCATGTATG AAAATGCATA CTGGGCCTGC AAGATGACTC AGTTCTGAAA CAAGGAAATC
  CAGAAAGAAA GGTAAAAAAA AAGTAAACAA AAAAATTATC GTTTAAAATG TTTACATCTT
  CTTTTATGTA TTTCTGACTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51551442	NES14868188	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	G	T	T	T	G	T	T	G	T
ss132968468	ENSMUSSNP7243175	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39118869					SNP	G	G	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51551442	NES14868188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8417923 () rs orientation: forward

Symbol	Name	Function Class
Gm45062	predicted gene 45062	Intron
Rr626392	regulatory region 626392	725 bp distal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron