rs39113178 SNP Detail

Summary

• ID
  rs39113178
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122069636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAACTTAC AACAGTGACT TTGATGATTC CAGCCCCAGA
  AATTCAGGGA AAAAACTGAC AGCCCAAAAC CACCAAAATT TGCATATCCA AGAGGAAAAA
  S
  GAGCCAATGT TGTGTCTCTT ACAGAAGTTA GAAAGGAGAA TTGTAAGAGT CTGGATGAAG
  AGGACCTCAA AATCACAGAG GAAAAAGTAA TTAATGAGAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51020924	NES13905119	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39113178					SNP	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020924	NES13905119	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122069636 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1119 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			1589 bp distal
Rr584274	regulatory region 584274			966 bp distal
Tssr31491	transcription start site region 31491			1572 bp downstream
Tssr31492	transcription start site region 31492			407 bp downstream