rs39110833 SNP Detail

Summary

• ID
  rs39110833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108042407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGCTAA GTGGCTGAAA
  GGGCTGGGGG TGGTGCCCTT TTCTTTGGGG GCGGAGCCAG AGGGCGGCGC TAGAGGGCTG
  TCCCTTTCCC CCGGGGGCGG GGCCAGTGCC CTTTATATGG GGGCGGAGCT AGAAAGCAGC
  TCACCGATCT TAGGGGCGGT GCTAAAGGGC CTGTCTATTT CCCTTCTCTC CCCAGGCGGG
  R
  CCAGCGCTGT TCTAGACTGG GTTGGAGGGA TGTCCTGTAG CCCCACAGGG GCTGACTACA
  AGACTCCTCT TAATTCTCAC CAAGGGGAGC CTGCACCCTT CCATGTTGGG GCGGAGATAG
  AGGCCTGCGG ACAGCCTCCA TGGAAGGAAC CAGAGAGCTG CTTATATCTT GAGTAGTTGA
  GGCCAATGCC CATGTAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51821990	NES14764685	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	G	G		G	A	G
ss133494226	ENSMUSSNP5079619	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39110833					SNP	A	A	A	A	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821990	NES14764685	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108042407 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	464 bp upstream
Rr399804	regulatory region 399804	253 bp downstream
Rr399805	regulatory region 399805	within coordinates
Rr399806	regulatory region 399806	273 bp upstream
Rr636028	regulatory region 636028	475 bp distal
Rr636029	regulatory region 636029	391 bp distal
Rr636030	regulatory region 636030	127 bp distal
Rr636031	regulatory region 636031	357 bp proximal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	393 bp downstream