rs39101091 SNP Detail

Summary

• ID
  rs39101091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97317341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGCCGT ATGTTTTATT
  CCATTGACCT CAGAAAGCCC TGTTGGAATG TGACATACTC AATGTTTTTT GAGGAAGCCG
  CACGGTTGGC AAAACTAAAG CCACCCTCTG CGTGTGCCGA GGCACATGTG TGGGAAAGCC
  ACCCCCAGCA ACTGGGAGCA CCTGCTTATG GCAGACTGCA AGCTTGCTCA CAGTCTCGAT
  Y
  AGCCACCTGC CATTGGCCGG ACTTGGCATG GAAGGGAGTG TCTACAATTA ACAGCACGGC
  ACTTGTTAGC ACAAAACAAT CACTGCTGTT TGTGCTCCGT GTGGGGGAAA GCCTGGGTTT
  CTAGGGCAGT TGAGAGAAAA CAAAGCAGGG CCGGGCAAGT CGCTCATTTG GTAGAGCGCT
  TGCCTAACAT GCACCAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51772249	NES14791821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39101091					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51772249	NES14791821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97317341 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd4b	FERM domain containing 4B			Intron
				Noncoding-Transcript-Variant
Rr635138	regulatory region 635138			590 bp distal
Rr635139	regulatory region 635139			within coordinates
Rr635140	regulatory region 635140			830 bp proximal