rs39092513 SNP Detail

Summary

• ID
  rs39092513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:123156195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGGTTA GTTTTCTCCT
  GTGTAGAGAT GGGCAGATCT TGTTCTCTCC TTGACTTGTA TGAGGGTTCC TTACGAGGGC
  CCATGGGGAG CTGAGGGATT TCAGGACCTG ATGCTGTATC TGGTCTGCTG GTGGGACTCT
  ACAGATAGAA AACGAAGGGA ACCCGAATCT AGGTTAGATG TGCATTTTAC AGTGTCCCTG
  R
  AGCCAAGAGT ATCCCTTGGG CAGGTGGTAG TATACATCTT TAAACCCAGC AATTCAGGAG
  GCAGAGGCAG GCAGATCTCT GAGTTCCAGG CCAGCCTGGT CTCCAGAGCA AGTTCTAAGA
  CAGCCAGAGC TACACAGAGA AACACTATCT TAAAAAACAA AAGTTTCCTT CAGAGCCTAC
  CTTTAGGCTG TCTGTCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51195016	NES13812744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39092513					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195016	NES13812744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123156195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Orai1	ORAI calcium release-activated calcium modulator 1			Intron
				Noncoding-Transcript-Variant
Rr620049	regulatory region 620049			259 bp distal
Rr620050	regulatory region 620050			1224 bp proximal
Tssr48747	transcription start site region 48747			1892 bp downstream
Tssr53187	transcription start site region 53187			557 bp upstream
Tssr53188	transcription start site region 53188			812 bp downstream
Tssr53189	transcription start site region 53189			838 bp downstream