rs39089022 SNP Detail

Summary

• ID
  rs39089022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86769760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCACGGC CATAAATGGA
  GTTGCTTCCC ACCTAAGGAA ACAGTGAGTC TGGGAATGAT GGGCAGAGGG ATAGGTAACA
  ACCGGCCATC CTATCCATCC TTCCACCATC CACTAAAGTG CCCAGTTTTA ATGAAAGGCG
  CAGTTGCTTA AGGCCCAGAG TGCTCCTCCA GTAAATGGAG GCTTTCATAC CCTTGAGGTG
  Y
  ACATTGAGCC AGCAAAGTGT TAAACCGCCA ATTGTCTTAG GCGCCAAAGT CTCCAACTGG
  TCAAAGCACC GAGGACTAAG TTAAAATGTA GACACAGGCA GACACAGAAT AAAAACTAAG
  AATAAGATGA TTCCTGGGCG CCAGGCACTG TGTGGAGACC GTTCGCTACA AGAGAGGCGA
  GGAGCGCCCT AAGAAGACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749455	NES14799905	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39089022					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749455	NES14799905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86769760 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	154 bp proximal
Rr633514	regulatory region 633514	1936 bp distal
Rr633515	regulatory region 633515	within coordinates
Rr633516	regulatory region 633516	796 bp proximal
Tssr61864	transcription start site region 61864	744 bp downstream
Tssr61865	transcription start site region 61865	812 bp downstream