rs39080088 SNP Detail

Summary

• ID
  rs39080088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8830835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGGAA GGACAGAGAG
  AATCAAATTC TTGTTGGAAT ACTTAAGTGA GCTCACTGAT ACAAGAGACC TGTTGGAGAT
  AATATGAACT TGTGTAAATG GAGGACACCT TCCTGGCCTA TAACAGAAAT GAATGAAAGG
  TTAGGGACAG AGTACAACAG GTCATCTTTT TAAGTAATAG AGAAACTAGA AACCAATCTC
  W
  GGTATGCCTG CCCATTCAAT GAGCAACTCA TCTGAGATTT CACAAGGATA AACTGCATTC
  AGGGACCACT GCATCATTGT CACCTATATA AAAAAAAAAA GTTTTAAATA GACTTTGATG
  AACAAGTTTT TTGTGAAGGT CTTCTTGCCA ATGCATATAG CAGAATTTTT AAAAAGGCCA
  ATGGGCAAAC ACTAACACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51546756	NES14862703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39080088					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51546756	NES14862703	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8830835 () rs orientation: forward

Symbol	Name	Function Class
Rr626446	regulatory region 626446	412 bp proximal
Rr626447	regulatory region 626447	570 bp proximal