rs39076895 SNP Detail

Summary

• ID
  rs39076895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127740571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGAA AGGAAGGCAG
  GCGTCCATGT GTCTGCCGTG TGACCTGTCC AAGAGAGGCT GATGCTGACA CCAGCATCGT
  GTGGCGTTGC AGAAAAAGCC TTATGCCACC TGCTCTCCAT GTGCAAAGAA CTCCACCCCA
  CCCCATTCCC CAATCTGGTT ATGACAAAGG GCCACCATAA AGGCAGATTA GAGGCATTTC
  Y
  TCTCAGTCAT CTGGGAGTAT AAGATGTGTG TGTGTGAGTG TGTGTGTGTG TGTGCGTGCG
  CGCGTGTGCA TGCCTGCGTG CGCATGCGTG CGTGCATGTG TGTGTGACAG CTTCCAAGTT
  CCTTTTCCCA CAGTCCCTTA AGCTTACATA AATGCTCTCA AAAATCATCC CCAAGCAAAC
  AGTGATAGAA TAAACAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51616853	NES14661547	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C	C	T	T	T		T	T	T	C		T
ss135875912	ENSMUSSNP5699347	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320958530	CHEV_3_127649840	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39076895					SNP	C	C	C	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616853	NES14661547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127740571 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr584909	regulatory region 584909	1512 bp proximal
Rr584910	regulatory region 584910	1951 bp proximal