rs39071967 SNP Detail

Summary

• ID
  rs39071967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143656133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTTTTG ACTTACTGAT
  TAGATGTGCA TTAGTTTCAT GACCTTCTAT AACAAATTTT TACAAGCTTT GTGGCCTCAC
  AGAATCTTTT ATCTTAGTTC TGAAGACTAC AAGGTGCTCA TAATGCCCTG AATTAATCAA
  ACAGTCCAGG AGAAATGTTT TGAGAGCCGC AGTTGACCCA CACAACAAGG CGATAATCAG
  Y
  GGTGTTGGTT CTTTAATCCA GCACATCACT TCCGAAAGGG TGTTCTGCTG AGCACTGGGC
  CCTGGGGATT CTTTAGATTT TAAAAATATA GGGGTTAGGA TTAAGGTGTT CTAGAGTCAA
  ATGAGTTTGG AAAATCTGAA CTCCTCCTTG GGGTGTCACA AATCACAGTA GTTCAGTAAA
  GATTTGATCT GACACATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658664	NES14642407	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39071967					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658664	NES14642407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143656133 () rs orientation: forward

Symbol	Name	Function Class
Rr406686	regulatory region 406686	1886 bp distal
Rr586569	regulatory region 586569	293 bp distal