rs39069611 SNP Detail

Summary

• ID
  rs39069611
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75464160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGACCC CAGGCCGCTC
  TGGCTGCCCA CGGAGCCGTG CGGACCCGAA CCGAGAAACC TCGCCTTACC GGCAACTGAG
  GCACGGACTT CACTTCCCAC CTTTGGAGCC CTCTTCAACT CCCGGATCAA TTCACTCCGG
  CGACGCCGGA AGGACCCGAA AGGAACCAGG CGTTGTCCGG AATCCTGCCC AGCAGGAGTC
  S
  CGCAAGGCCC GATGGGGATT TGTAGTTCCG CCCTCCATTT CCGTTAGCAC TTCCTGCAAT
  AGTAAGACTA CATTTCCCAG AAGGCTGTGC GAGAACGCCT TAGGCAATAG GTGGGGACAC
  TTCTAGCAAA TCAGAAGAGA GTTCCCTGTC TTTGAGGGAG GGGAGGAGAT GAAGAGAGAG
  CGCGCCCAGA AACGAGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51557834	NES14678957	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39069611					SNP	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557834	NES14678957	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75464160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	within coordinates
Pdcd10	programmed cell death 10	mRNA-UTR
Rr578348	regulatory region 578348	53 bp distal
Rr578349	regulatory region 578349	within coordinates
Rr578350	regulatory region 578350	within coordinates
Rr578351	regulatory region 578351	705 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	640 bp upstream
Tssr29563	transcription start site region 29563	657 bp upstream
Tssr29564	transcription start site region 29564	677 bp upstream
Tssr29565	transcription start site region 29565	723 bp upstream
Tssr29566	transcription start site region 29566	741 bp upstream
Tssr33586	transcription start site region 33586	within coordinates
Tssr33587	transcription start site region 33587	50 bp downstream
Tssr33588	transcription start site region 33588	71 bp downstream