rs39058268 SNP Detail

Summary

• ID
  rs39058268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86846547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTACATA CTACAGTATA
  TGTGGAATTC AAAAGTCAAC TTAAGAGACT GGATTCTCTG CTGCCTTTCT GTAGGTCGTT
  GGGCTTGAAC TCTGGTCTTG GAAGCAAGAT GCTTGGCAAG GAGTGTCTTA ATGACTGGGC
  CAGGAAATTT GTTTGTTTGT TTGTTTAAAG GCTTTGGGCA TTTGTTTTCT TACTTCCTTA
  S
  ACTAACTTTC TGAATGTTAA ATTCCTGGCT CCAAAGATGG GCACGTTTTA GTTTTCAATT
  CAAGCTACAA GCCTTTCTCC AGGAAGGTTG GTCTGTAAGG ACGTCTGTCT TGTCTGCCAT
  GGTTAGAAGA TTGGATGGAT TTCCTTCCTT TTCCCTTCCA TACTTATTTT TCTTTTCATT
  TGTTTCTTGT GTTGAAATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51748774	NES14798586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39058268					SNP	C	C	C	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748774	NES14798586	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86846547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			746 bp proximal
Tssr57515	transcription start site region 57515			1245 bp upstream