rs39047897 SNP Detail

Summary

• ID
  rs39047897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGACAC TGTGGCACAC
  ACTTGTAATT GAAGCATTTG GAAGACTGAG CCAGCCTGAG CTAAAGAAAG TTCAAAGCCA
  GCACTAGATA CACAGGGAGA CATAGCTCAA AAATGTTCTT TTCACAATTA CAAAATCATG
  ATTGCTACCA ATCTGAAAAA CAGAAAATAT AAATAAATAC TGTCCCAAAT ATCTAGACAC
  R
  AGGAAGTGGA AGACCTTCCA CAATAACGGA AAGTTTCACT ACTATTCAGT GTTTTGTGAA
  CACCCTTTCA AGGCCTCTCT CAAATGTGCC ATAAGTGTGC TTCGGGTTAA GCCCAGTCCA
  GCCAGCAGCA CAGAGCGGCA CTGACGAGCC ACTGCTCTCT GGACTGGGGA GGAGGCGTGC
  TGCCCTCTAG TGACTCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51059806	NES13424270	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	A	A	G	A	A
ss136102257	ENSMUSSNP1185667	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs39047897					SNP	A	A	G	A	G	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059806	NES13424270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			366 bp distal
Rr587524	regulatory region 587524			within coordinates
Rr587525	regulatory region 587525			177 bp proximal
Rr587526	regulatory region 587526			221 bp proximal
Rr587527	regulatory region 587527			640 bp proximal
Rr587528	regulatory region 587528			932 bp proximal