rs39046877 SNP Detail

Summary

• ID
  rs39046877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69810304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAATAG GTACAAAGGA
  TTTTATGGCT ATTGGAAGCT AGACTGTTCT GAGATCCTGC TGGCCCTGCA GCAAATGGAG
  GGGGTGGTTC TTAGATGGCA GAACCTCCTG GAAGGAGTTG GCTCTGTTAA TGGTTTCAGC
  TAGGGTGTTG GTGTGAGGCA TCCACTGATG CTCTCTCTAT CAATGCTTCT AGAAGGCCAA
  K
  GTTGGAAGAG GGCCAACCTG GCACAGAACT GGTATTAGAA GCCACGCGGT ACAGGGCTGC
  TTGGACAAAG ACGAGTGTAT TTTTATCTAG TAGCCTGTCC CCTGAAGGGA CCCCGACACG
  GCTTCTATTT TTCAGTAGTA CTTTGTTGGA GTGGATTTTG CCTTTGGGGG AAAATTCAGC
  AGTACCAGGA GATGTTTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50977454	NES13926352	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39046877					SNP	G	G	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977454	NES13926352	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69810304 () rs orientation: forward

Symbol	Name	Function Class
D3Mit277	DNA segment, Chr 3, Massachusetts Institute of Technology 277	457 bp proximal
Rr578240	regulatory region 578240	600 bp distal
Rr578241	regulatory region 578241	within coordinates