rs39045738 SNP Detail

Summary

• ID
  rs39045738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86995106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCTACAC AGACGCACAT
  GCCCTGTGAC TGCCTGTGAC TGCCTGTGTC TGCCTGTGTC TGCCTGTGTC TGTCTCTCTG
  TGCAGTATTG TAGTTGAATC TGGGCATGCG CATTGTGGAG CAGTGGTACA GTGTGATAGT
  ATTTCTATAA CCCTCCCTCC ACCTAAGTAA AAAGAGCAAA CACCTCCGTG ACAGTTCTTG
  R
  AGAAATGAGC ACCAGAAGAA CACCCTAGAA TTTTAACTTC TTAATTAATG TGATTGTAAT
  TTTTTAGTGG TTTTGCTCTT TATTTTTATT ATTATTATTA TTAATTTTTT GAATGTATGT
  GAGTACACTG TTGCTCTTTT TGGACACACC AGAAGAGGGC ATCAGATTCC ATTACAGATG
  GTTGTGAGCC ACCATGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746365	NES14795463	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39045738					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746365	NES14795463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86995106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfu1	NFU1 iron-sulfur cluster scaffold			Intron
				Noncoding-Transcript-Variant
Rr633575	regulatory region 633575			1325 bp distal
Rr633576	regulatory region 633576			895 bp distal
Rr633577	regulatory region 633577			977 bp distal