rs39041230 SNP Detail

Summary

• ID
  rs39041230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCAGAA GCCAGTACTA
  GTTACTAGTT ATCAGCAAAA ATGAGCGTTC TTCTGTTTGC ACTTTTATGG GGTGGTGAGG
  CCAAGGCAGC ATGCCAGGGT ATGGCCAGCT AGCCAGTGGG ATCTGTTGAC AGGGGCCTCA
  GATGTAGGGC AAGGTAGAAG AGAACGAGGC TCAGGAAGCC TCGGAATTTC TGGAACTGTT
  R
  CTCTTATCTT GTGCCTCTCC TTCCTCAGCC CACCATCAAA GTTTGGAATC AATGACTTGT
  TTTGAGTTTG CAGGCTAAAG GACTACAGCA ATCCCACGAA GACAAACCAC ACCTTGATCC
  CACTGCAGAT ACGGACTTTG GCCTTTTACG TTGGTGATCC AGACCTTTGG GTCTGATAGG
  GAGGAGTGAT TGTGCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51586208	NES14666244	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39041230					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586208	NES14666244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181059 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1511 bp proximal
Rr582220	regulatory region 582220	1991 bp proximal