rs39039253 SNP Detail

Summary

• ID
  rs39039253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135011597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCTTAC TCTCTGCCTT
  TTCTCAGAGA GACTGCATTA GCCAGGATAA CTGTAGGCTC ACAGTGAAGG GCTAACTCCA
  CGTATGAAGA TGGTGCAGAT GATGGATTTG AATCGAAATT CACAACAAAT GGGTGCTTGG
  ACTAGCTCTG CCAACGACTC CCATGATAAG GTCGTTAGCG CTCTGGTCAG GTGTTCCACG
  R
  GCAAATGACA GACTGACCCA GCCACCCAGC TTGCCCTGTC CTTTTTGCTT TAGTTTCTGG
  TCTTTGTTTT TAGAAATCAG CTTCTTACTA GGTAGCTCAC ACTGGCTTTT ATCTCACCAT
  TCCCCTGCCT CAGGATTGCT GAGGTGCTGA GGCACAATAT AGACTGTGCC ACCATGCCTA
  GTTCTTTAGT TTATGAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034018	NES13903092	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39039253					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034018	NES13903092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135011597 () rs orientation: forward

Symbol	Name	Function Class
Bdh2	3-hydroxybutyrate dehydrogenase, type 2	1410 bp downstream
Gm46826	predicted gene, 46826	within coordinates
Rr585683	regulatory region 585683	930 bp distal
Rr585684	regulatory region 585684	1483 bp proximal
Rr585685	regulatory region 585685	1920 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	1486 bp upstream
Tssr31804	transcription start site region 31804	1845 bp upstream
Tssr31805	transcription start site region 31805	1875 bp upstream