rs39036469 SNP Detail

Summary

• ID
  rs39036469
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135366221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATTCC ATAAGGGCGT
  CAGATGGCTT CTATGTCCCA GTATGATAAC CAATAGCTGT GTAATACACA AACATATTCG
  ACATTTTATA GTTGTTTGAG TGAAAATTAA GACTTGAAGC TGAAGACAGT CTAGAAGAAC
  ACTTCTGTGC TCATTTGAAA ATTCACTTTC TCGGCTGAAG CTTAAGCCTT ATTTTGCATA
  W
  GTAAATTTGA GGTGAGATAA AAGTTCAGGT TGTAATTTTT AATAAACTGT AACTTCAAAG
  AGAATACATT TTACCTTCTC AATATTATGA CTGATCAGAT AACACGGAAG CCTAAACACT
  GTACCAGGAA AGCAATTGGA AACCTAATTT GAAGCCAAAT AAGAAAGACA GATGGGTGGT
  TACTGGGGTC AGTAATGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51649298	NES14653883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39036469					SNP	T	T	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649298	NES14653883	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135366221 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1739 bp proximal